Needed to adjust the jprt settings in the makefiles and the jprt properties.
The JPRT system (jdk build/test/putback submittal system) lets the workspace define what is in the bundle that is saved in JPRT. These rules are defined in the hotspot makefile make/Makefile and it was including too much in the jdk bundles. There is a separate bundle for each type of build: product, debug, and fastdebug, and each resulting bundle should really only be one jdk.