Files in the OpenJDK repositories cannot have execute permissions, so any shell scripts need to be run via the shell command:

diff --git a/common/autoconf/configure b/common/autoconf/configure
--- a/common/autoconf/configure
+++ b/common/autoconf/configure
@@ -10489,7 +10489,7 @@
 
 # Setup default logging of stdout and stderr to build.log in the output root.
 BUILD_LOG='$(OUTPUT_ROOT)/build.log'
-BUILD_LOG_WRAPPER='$(SRC_ROOT)/common/bin/logger.sh $(BUILD_LOG)'
+BUILD_LOG_WRAPPER='$(SH) $(SRC_ROOT)/common/bin/logger.sh $(BUILD_LOG)'
 
 
 
diff --git a/common/autoconf/configure.ac b/common/autoconf/configure.ac
--- a/common/autoconf/configure.ac
+++ b/common/autoconf/configure.ac
@@ -1004,7 +1004,7 @@
 
 # Setup default logging of stdout and stderr to build.log in the output root.
 BUILD_LOG='$(OUTPUT_ROOT)/build.log'
-BUILD_LOG_WRAPPER='$(SRC_ROOT)/common/bin/logger.sh $(BUILD_LOG)'
+BUILD_LOG_WRAPPER='$(SH) $(SRC_ROOT)/common/bin/logger.sh $(BUILD_LOG)'
 AC_SUBST(BUILD_LOG)
 AC_SUBST(BUILD_LOG_WRAPPER)