The jar reorder classlists stored in the source repository are for a full JRE rt.jar. When building the SE Compact Profiles the set of excluded types overlaps with the types in the classlist. This resulted in numerous warnings that an included type was also excluded, and so this warning was disabled as part of the Compact Profiles work.

The classlists need to be made profile-aware. But also see JDK-7032729 as to whether this whole jar reordering business is worthwhile in the first place.