From Jon;

In JavacElements, round about line 175, why do you use getSimpleName? If you're comparing against the flatname, don't you want the full name of the class?

In JavacElements:

        String annoTypeName = annoType.getSimpleName();
        String containerTypeName = containerType.getSimpleName();

Later we have:

            if (annoTypeName.equals(rawAttributes[i].type.tsym.flatName().toString())) {

and:
            containerTypeName.equals(rawAttributes[i].type.tsym.flatName().toString())) {