I have 2 jars:

  indirect2.jar:
       class use.indirect2.UseUnsafeIndirectly2 {
            static Object obj = new use.unsafe.UseUnsafeClass();
       }

  unsafe.jar:
       class use.unsafe.UseUnsafeClass {
            static Object unsafe = Unsafe.getUnsafe();
       }
       class use.unsafe.UseClassWithUnsafe {
            static Object obj = new UseUnsafeClass()
       }

When I run:

   jdeps -v -e use.unsafe.UseUnsafeClass dist/indirect2.jar dist/unsafe.jar

it prints:

indirect2.jar -> dist/unsafe.jar
   use.indirect2.UseUnsafeIndirectly2 -> use.unsafe.UseUnsafeClass unsafe.jar
   use.unsafe.UseClassWithUnsafe -> use.unsafe.UseUnsafeClass unsafe.jar

as if use.unsafe.UseClassWithUnsafe was contained in indirect2.jar,
while it is in fact contained in unsafe.jar...