Load the attached fxml file (the simplest way is to use Scene Builder, Preview window).
Open a popup by clicking on a control, then move the mouse wheel : the popup does not follow its control.
Do the same thing, but move directly with the ScrollBar : the following NPE is raised, and the popup disappear.

java.lang.NullPointerException
at com.sun.javafx.scene.control.skin.ScrollBarSkin$8.handle(ScrollBarSkin.java:215)
at com.sun.javafx.scene.control.skin.ScrollBarSkin$8.handle(ScrollBarSkin.java:199)
at com.sun.javafx.event.CompositeEventHandler.dispatchBubblingEvent(CompositeEventHandler.java:69)
at com.sun.javafx.event.EventHandlerManager.dispatchBubblingEvent(EventHandlerManager.java:217)
at com.sun.javafx.event.EventHandlerManager.dispatchBubblingEvent(EventHandlerManager.java:170)
at com.sun.javafx.event.CompositeEventDispatcher.dispatchBubblingEvent(CompositeEventDispatcher.java:38)
at com.sun.javafx.event.BasicEventDispatcher.dispatchEvent(BasicEventDispatcher.java:37)
at com.sun.javafx.event.EventDispatchChainImpl.dispatchEvent(EventDispatchChainImpl.java:92)
at com.sun.javafx.event.BasicEventDispatcher.dispatchEvent(BasicEventDispatcher.java:35)
at com.sun.javafx.event.EventDispatchChainImpl.dispatchEvent(EventDispatchChainImpl.java:92)
at com.sun.javafx.event.BasicEventDispatcher.dispatchEvent(BasicEventDispatcher.java:35)
at com.sun.javafx.scene.control.skin.ScrollPaneSkin$12.dispatchEvent(ScrollPaneSkin.java:453)
at com.sun.javafx.event.EventDispatchChainImpl.dispatchEvent(EventDispatchChainImpl.java:92)
at com.sun.javafx.event.BasicEventDispatcher.dispatchEvent(BasicEventDispatcher.java:35)
at com.sun.javafx.event.EventDispatchChainImpl.dispatchEvent(EventDispatchChainImpl.java:92)
at com.sun.javafx.event.BasicEventDispatcher.dispatchEvent(BasicEventDispatcher.java:35)
at com.sun.javafx.event.EventDispatchChainImpl.dispatchEvent(EventDispatchChainImpl.java:92)
at com.sun.javafx.event.BasicEventDispatcher.dispatchEvent(BasicEventDispatcher.java:35)
at com.sun.javafx.event.EventDispatchChainImpl.dispatchEvent(EventDispatchChainImpl.java:92)
at com.sun.javafx.event.EventUtil.fireEventImpl(EventUtil.java:53)
at com.sun.javafx.event.EventUtil.fireEvent(EventUtil.java:33)
at javafx.event.Event.fireEvent(Event.java:171)
at javafx.scene.Scene$MouseHandler.process(Scene.java:3324)
at javafx.scene.Scene$MouseHandler.process(Scene.java:3164)
at javafx.scene.Scene$MouseHandler.access$1900(Scene.java:3119)
at javafx.scene.Scene.impl_processMouseEvent(Scene.java:1559)
at javafx.scene.Scene$ScenePeerListener.mouseEvent(Scene.java:2261)
at com.sun.javafx.tk.quantum.GlassViewEventHandler.handleMouseEvent(GlassViewEventHandler.java:228)
at com.sun.glass.ui.View.handleMouseEvent(View.java:528)
at com.sun.glass.ui.View.notifyMouse(View.java:922)
at com.sun.glass.ui.win.WinApplication._runLoop(Native Method)
at com.sun.glass.ui.win.WinApplication.access$100(WinApplication.java:29)
at com.sun.glass.ui.win.WinApplication$2$1.run(WinApplication.java:67)
at java.lang.Thread.run(Thread.java:722)