If we run WrongStageFocusWithApplicationModalityTest in Ubuntu24.04 on wayland. It fails intermittently 2/5 times. Whenever it fails i can see that mouse/keyevents are not identified and the Alert window never gets focused. As a result of which alert windows are not getting closed.

Same test never fails on Ubuntu22.04 and issue is not seen with Xorg windowing system.

WrongStageFocusWithApplicationModalityTest > testWindowFocusByClosingAlerts() FAILED
    org.opentest4j.AssertionFailedError: Timeout: Alerts not closed, wrong focus ==> expected: <true> but was: <false>
        at app//org.junit.jupiter.api.AssertionFailureBuilder.build(AssertionFailureBuilder.java:151)
        at app//org.junit.jupiter.api.AssertionFailureBuilder.buildAndThrow(AssertionFailureBuilder.java:132)
        at app//org.junit.jupiter.api.AssertTrue.failNotTrue(AssertTrue.java:63)
        at app//org.junit.jupiter.api.AssertTrue.assertTrue(AssertTrue.java:36)
        at app//org.junit.jupiter.api.Assertions.assertTrue(Assertions.java:214)
        at app//test.util.Util.waitForLatch(Util.java:331)
        at app//test.robot.javafx.stage.WrongStageFocusWithApplicationModalityTest.testWindowFocusByClosingAlerts(WrongStageFocusWithApplicationModalityTest.java:74)